BioTM, LASIGE, Fac. Ciências, Universidade de Lisboa

Biomedical Text Mining Team

Lisboa, Portugal

Pinned Repositories

BENT
Biomedical Term Annotator
Language:Python9 7 31
BiOnt
BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
Language:Python26 7 76
BOLSTM
Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies
Language:Python15 5 42
DiShIn
Semantic Similarity Measures using Disjunctive Shared Information
Language:Python25 6 34
IHP
Identification of Human Phenotype Entities
Language:Python11 3 46
K-RET
K-RET: Knowledgeable Biomedical Relation Extraction System
Language:Python9 9 53
MER
Minimal Named-Entity Recognizer (MER)
Language:Shell56 7 388
merpy
MER python interface
Language:Python12 3 35
PGR
A Silver Standard Corpus of Human Phenotype-Gene Relations
Language:Python12 7 03
REEL
REEL: Relation Extraction for Entity Linking
Language:Python10 5 03

BioTM, LASIGE, Fac. Ciências, Universidade de Lisboa's Repositories

lasigeBioTM/MER
Minimal Named-Entity Recognizer (MER)
Language:Shell56 7 388
lasigeBioTM/BiOnt
BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
Language:Python26 7 76
lasigeBioTM/DiShIn
Semantic Similarity Measures using Disjunctive Shared Information
Language:Python25 6 34
lasigeBioTM/BOLSTM
Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies
Language:Python15 5 42
lasigeBioTM/merpy
MER python interface
Language:Python12 3 35
lasigeBioTM/PGR
A Silver Standard Corpus of Human Phenotype-Gene Relations
Language:Python12 7 03
lasigeBioTM/REEL
REEL: Relation Extraction for Entity Linking
Language:Python10 5 03
lasigeBioTM/BENT
Biomedical Term Annotator
Language:Python9 7 31
lasigeBioTM/K-RET
K-RET: Knowledgeable Biomedical Relation Extraction System
Language:Python9 9 53
lasigeBioTM/K-BiOnt
Biomedical Relation Extraction with Knowledge Graph-based Recommendations
Language:Python8 8 14
lasigeBioTM/ICRel
Identifying Cellular Relations
Language:Python6 5 01
lasigeBioTM/BLiR
Biomarker Literature Retrieval
Language:TeX5 6 02
lasigeBioTM/BOE
BOE: BiOnt Enhanced for Relation Extraction in Gene and Chemical Compounds interactions (DrugProt corpus)
Language:Python4 7 0
lasigeBioTM/MultiNEL-corpus
A multilingual silver standard corpus containing English, Portuguese and Spanish clinical case reports annotated with medical diagnostic codes
Language:Python3 5 11
lasigeBioTM/NILINKER
Attention-based approach to NIL Entity Linking
Language:Python3 8 1
lasigeBioTM/RecSys.Scifi.tutorial
Language:Jupyter Notebook3 6 01
lasigeBioTM/knowledge-extraction-from-CORD-19
Knowledge extraction from CORD-19 (COVID-19 Open Research Dataset)
Language:Python2 5 02
lasigeBioTM/biocreativeVII
lasigeBioTM at BioCreative VII Track 1: Text mining drug and chemical-protein interactions using biomedical ontologies
Language:Python1 6 0
lasigeBioTM/biocreativeVIII_Track1
10
lasigeBioTM/ChemRecSys
Language:Python1 6 00
lasigeBioTM/CheRM
Chemical Compounds Recommender Matrix
Language:Python1 5 00
lasigeBioTM/SemEval2023_Task-7
Language:Python1 6 00
lasigeBioTM/X-Linker
Language:Python1 3 01
lasigeBioTM/cARM
create Astro Ratings Matrix
Language:Python5 0
lasigeBioTM/exposome_NER_NEL
Language:Python5 0
lasigeBioTM/K-RET-NEG
Language:Python
lasigeBioTM/MiCRA
Microbial Communities for Regenerative Agriculture
Language:Python4 0
lasigeBioTM/NPDR
Negative Phenotype-Disease Relations dataset
Language:Python7 0
lasigeBioTM/SeEn
Sequential Enrichment
Language:Python7 0
lasigeBioTM/SemanticSimDBcreator
Semantic Similarity Database Creator
Language:Python5 0