lauren-mak
Current computational biologist, former mathlete and lifelong music enthusiast.
Weill Cornell Medical CollegeNew York City
Pinned Repositories
ariadne
Ariadne, a de Bruijn graph-based program for barcoded read deconvolution
ariadne-assembly-support
bacteria_genome_pull
Download latest bacterial sequencing assembly files from NCBI database (RefSeq or Genbank)
camp_binning
camp_mag-gold-std
CAMP_Module_Template
constrained_lda
Online variational Bayes for latent Dirichlet allocation (LDA)
deconvolution_manuscript
Manuscript Source for Minerva
DESMAN
De novo Extraction of Strains from MetAgeNomes
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
lauren-mak's Repositories
lauren-mak/ariadne
Ariadne, a de Bruijn graph-based program for barcoded read deconvolution
lauren-mak/ariadne-assembly-support
lauren-mak/bacteria_genome_pull
Download latest bacterial sequencing assembly files from NCBI database (RefSeq or Genbank)
lauren-mak/camp_binning
lauren-mak/camp_mag-gold-std
lauren-mak/CAMP_Module_Template
lauren-mak/constrained_lda
Online variational Bayes for latent Dirichlet allocation (LDA)
lauren-mak/deconvolution_manuscript
Manuscript Source for Minerva
lauren-mak/DESMAN
De novo Extraction of Strains from MetAgeNomes
lauren-mak/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
lauren-mak/ema
Fast & accurate alignment of barcoded short-reads
lauren-mak/gimmebio
lauren-mak/lolcode-spec
LOLCODE language specification archives and development.
lauren-mak/MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
lauren-mak/metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
lauren-mak/minerva_barcode_deconvolution
Sort Linked Read DNA Into Fragment Specific Clusters
lauren-mak/miqScoreShotgunPublic
Repo for public-facing shotgun MIQ score
lauren-mak/selectionTools
Pipeline to take VCF through to Selection Analysis.
lauren-mak/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
lauren-mak/strain-detangler
lauren-mak/TransmissionAnalyzer