Contains notes and documented pipelines for analysis of genomics data for focal cortical dysplasia (FCD).
- Code
- Python pipelines for download from SRA database, HLA Class I typing, RNA read alignment with STAR, and HTSeq read counting
- DataSources
- documents specific SRA projects that were used for analysis
- Logistics
- miscellaneous
- Notes
- variety of notes from literature review of FCD, immunotherapy, benign brain tumors, and bioinformatics
- notes from conferences/talks
- docs
- source for documentation site (generated with pdoc) here