laxeye
2018- research fellow at NRC Kurchatov Institute (Moscow, Russia). 2015-2018: jr. research fellow at Microbial Genomics lab, IKBFU (Kaliningrad, Russia).
NRC Kurchatov InstituteRussia
Pinned Repositories
BioKotlin
Kotlin realisation of bioinformatics routine operations and file handling.
cwl-extract-rrna
CWL tool to extract eukaryotic rRNA from genome assembly
EPhIMM
Express Phylogenetic Inference based on Multiple Markers
genomic-utilities
Visualization for genomics
pyYAMB
Express metagenome binning
YAMB
YAMB: Yet Another Metagenome Binner
zga
ZGA prokaryotic genome assembly and annotation pipeline
laxeye's Repositories
laxeye/zga
ZGA prokaryotic genome assembly and annotation pipeline
laxeye/EPhIMM
Express Phylogenetic Inference based on Multiple Markers
laxeye/BioKotlin
Kotlin realisation of bioinformatics routine operations and file handling.
laxeye/cwl-extract-rrna
CWL tool to extract eukaryotic rRNA from genome assembly
laxeye/YAMB
YAMB: Yet Another Metagenome Binner
laxeye/BFXscripts
Simple scripts for bioinformatics
laxeye/genomic-utilities
Visualization for genomics
laxeye/pyYAMB
Express metagenome binning
laxeye/bioconda-recipes
Conda recipes for the bioconda channel.
laxeye/crimeaNGS2020
SHort course on genome assembly and annotation
laxeye/dfast_core
DDBJ Fast Annotation and Submission Tool
laxeye/elections
Statistical anomalies in Russian elections
laxeye/EMIRGE
EMIRGE reconstructs full length ribosomal genes from short read sequencing data.
laxeye/FastANI
Fast Whole-Genome Similarity (ANI) Estimation
laxeye/graftm-add-gpkg
GraftM additional packages
laxeye/mapgen
Mapping file generator for QIIME
laxeye/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
laxeye/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
laxeye/ProtHint
Protein hint generation pipeline for gene finding in eukaryotic genomes
laxeye/russian-grape-cultivars-genotyping
Source code and data relating to "SNP-based analysis reveals authenticity and genetic similarity of Russian indigenous grape cultivars" article
laxeye/SeqPrep
Tool for stripping adaptors and/or merging paired reads with overlap into single reads.
laxeye/SimSeq
An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential for chimeric reads, and non-biotinylated fragment pull down in mate-pair libraries . Additionally the program provides the ability to model both site and base specific error, and scripts are provided to train this error model on real datasets. My hope in creating this program is to generate as realistic data as possible to assist in assessing the accuracy of genome assembly tools.
laxeye/Unicycler
hybrid assembly pipeline for bacterial genomes