Everything that glitters ain't fishscale
-- MF Doom - Figaro, Album: Madvillain
Software package for the visualization, exploration and analysis of point based spatial transcriptomics data. FISHscale can load single or multiple datasets.
The following instructions should work for Linux and Mac.
git clone https://github.com/linnarsson-lab/FISHscale.git
cd FISHscale
pip install -e.
Clone or download the repository.
Use the single-dataset notebook to get started with single datasets.
If you want to use multiple datasets, download the data from our website
Then use the multi-dataset notebook to get started with multi-dataset objects.