Crawford Lab

BANNs

Code and simulations using biologically annotated neural networks

callback

Calibrated clustering via knockoffs for single-cell genomics

cancer-drug-synergy-prediction

Github repo for cancer drug synergy prediction work

i-LDSC

Code and simulations using interaction-LD score regression

multio-viz

A platform for the interactive assessment of gene regulatory networks

mvMAPIT

The multivariate MArginal ePIstasis Test

recall

Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing

SINATRA

A statistical framework for feature selection and association mapping with 3D shapes

SINATRA-Pro

Topological data analytic approach for discovering biophysical signatures in protein dynamics

sme

A fast and scalable method to detect epistasis in complex traits from biobank-scale studies

lcrawlab/BANNs

Code and simulations using biologically annotated neural networks

lcrawlab/i-LDSC

Code and simulations using interaction-LD score regression

lcrawlab/mvMAPIT

The multivariate MArginal ePIstasis Test

lcrawlab/callback

Calibrated clustering via knockoffs for single-cell genomics

lcrawlab/SINATRA

A statistical framework for feature selection and association mapping with 3D shapes

lcrawlab/recall

Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing

lcrawlab/SINATRA-Pro

Topological data analytic approach for discovering biophysical signatures in protein dynamics

lcrawlab/multio-viz

A platform for the interactive assessment of gene regulatory networks

lcrawlab/sme

A fast and scalable method to detect epistasis in complex traits from biobank-scale studies

lcrawlab/ashapesampler

R package for generating synthetic shapes and images using the α-shape sampler

lcrawlab/ashapesampler_paper_results

Code to reproduce analyses and results provided in the alpha shape sampler paper beyond what is given in the R package.

lcrawlab/callbackreproducibility

lcrawlab/cancer-drug-synergy-prediction

Github repo for cancer drug synergy prediction work

lcrawlab/GOALS

Code and tutorials for implementing the GlObal And Local Score

lcrawlab/ltsim

A liability threshold linear mixed model simulation tool for case-control studies.

lcrawlab/recallreproducibility

lcrawlab/SINATRA_AoAS_Results

Reproducibility repo for the simulation and real data results in the SINATRA manuscript set to appear in AoAS.

lcrawlab/SINATRA_Pro_Paper_Results

Reproducibility repo for the simulation and real data results in the SINATRA Pro manuscript

lcrawlab/Geneformer