ldutoit
Lecturer in Evolutionary Biology @Zoology_Otago. Teaching and reproducible research within the -omics space.
@otagoNew Zealand
Pinned Repositories
bully_gbs
eelRNA
genetic_trade_offs_simulations
This repository contains the code necessary to replicate the simulations in Connallon et al. : Predicting the prevalence of genetic trade-offs among adaptive substitutions
ldutoit
male_female_fst
metabarcoding_Rvisuals
This script contains the R visualisations presented in the metabarcoding workshop ran by Hugh Cross in Otago October 4, 2018
personal_libraries
contains all the personal code necessary to run my projects associated scripts (Python anr R libraries as well as some other commands)
whale_genomics
This repository contains scripts for Pgymy whale (Caperea marginata) evolution study
2024
python_ebc_2016
Material for the python course to be held at EBC in 2016
ldutoit's Repositories
ldutoit/bully_gbs
ldutoit/ldutoit
ldutoit/metabarcoding_Rvisuals
This script contains the R visualisations presented in the metabarcoding workshop ran by Hugh Cross in Otago October 4, 2018
ldutoit/ngsreads2microsats
Design microsats from NGS reads
ldutoit/personal_libraries
contains all the personal code necessary to run my projects associated scripts (Python anr R libraries as well as some other commands)
ldutoit/2019-06-11_GBS_EE
Resource for Genotype-by-Sequencing in Ecology and Evolution workshop
ldutoit/2020-spring-school-GBS
ldutoit/Akatore_kelp_epibiota
Comparative phylogeographic analysis of Durvillaea kelps and associated epibiota in Akatore, New Zealand
ldutoit/Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
ldutoit/eelRNA
ldutoit/genetic_trade_offs_simulations
This repository contains the code necessary to replicate the simulations in Connallon et al. : Predicting the prevalence of genetic trade-offs among adaptive substitutions
ldutoit/whale_genomics
This repository contains scripts for Pgymy whale (Caperea marginata) evolution study
ldutoit/bully_RNA
ldutoit/ciaran_revisions_galaxids
ldutoit/dummy
ldutoit/galaxias_introgression
ldutoit/Gene312_hoiho_diet
ldutoit/hacky_hour_data_management
ldutoit/lemurs_contactzone_grimur
RADseq project on the contact zone between Microcebus murinus & M. griseorufus in the Andohahela area.
ldutoit/long-read-assembly
Long-read assembly workshop OBSS
ldutoit/Maurea_Micrelenchus_phylo
ldutoit/metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
ldutoit/my_msc_project
this is a toy example for hacky hour
ldutoit/Paternal_hypoxia_Ragsdale_2020
This repository contains the scripts and data used in the manuscript Paternal hypoxia exposure primes offspring for increased hypoxia resistance, Ragsdale et al
ldutoit/QC_Zoo_Workshop
This small workshop aims at introducing student to quality contol of sequencing data
ldutoit/RNA-seq-workshop
ldutoit/snpR
ldutoit/uniquevariation
ldutoit/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
ldutoit/ZOOL316_tuto