Pinned Repositories
cellmaps_coembedding
MuSIC
Multi-Scale Integrated Cell
ddot
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
DrugCell
A visible neural network model for drug response prediction
FlashLFQ
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
gptmd
Use open search results (from Morpheus) to create a database with uncovered candidate PTM annotations
HiDeF
HiDeF (Hierarchical community Decoding Framework)
Informed-Proteomics
Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
MetaMorpheus
Fork of the Morpheus Software
ProteoformSuite
Construction, quantification, and visualization of proteoform families
leahvschaffer's Repositories
leahvschaffer/ddot
Toolkit for constructing, analyzing, and visualizing data-driven ontologies
leahvschaffer/DrugCell
A visible neural network model for drug response prediction
leahvschaffer/FlashLFQ
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
leahvschaffer/gptmd
Use open search results (from Morpheus) to create a database with uncovered candidate PTM annotations
leahvschaffer/HiDeF
HiDeF (Hierarchical community Decoding Framework)
leahvschaffer/Informed-Proteomics
Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
leahvschaffer/MetaMorpheus
Fork of the Morpheus Software
leahvschaffer/MuSIC_MUSE
leahvschaffer/MyTools
leahvschaffer/mzIdentML
Repository for mzIdentML and the corresponding examples
leahvschaffer/mzLib
Library for mass spectrometry projects
leahvschaffer/PCprophet
Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets
leahvschaffer/PrInCE
R implementation of the PrInCE package for predicting interactomes from co-elution data
leahvschaffer/ProteoformSuite
Analysis, visualization, validation suite for proteoform analysis
leahvschaffer/ProteoformSuiteVignettes
Vignettes for Proteoform Suite