Pinned Repositories
90DaysOfDevOps
I am using this repository to document my journey learning about DevOps. I began this process on January 1, 2022, and plan to continue until March 31. I will be dedicating one hour each day, including weekends, to gaining a foundational understanding of the various aspects of DevOps. This will be a 90-day intensive study period. 2022 & 2023 inc.
airflow-role
Ansible role to install Apache Airflow
ansible-role-incron
Ansible Role - incron
containers
Bioinformatics containers
covigator-ngs-pipeline
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
docker-kea
The ISC Kea DHCP server, Control Agent and DDNS running inside individual Docker containers.
iwc
Intergalactic Workflow Commission
openldap-ansible-role
OpenLDAP Ansible role
tripal_linkout
The Linkout module provides a web service for generation of external links
tronflow-vcf-postprocessing
A Nextflow variant normalization pipeline based on vt and bcftools
lebarsarthur's Repositories
lebarsarthur/90DaysOfDevOps
I am using this repository to document my journey learning about DevOps. I began this process on January 1, 2022, and plan to continue until March 31. I will be dedicating one hour each day, including weekends, to gaining a foundational understanding of the various aspects of DevOps. This will be a 90-day intensive study period. 2022 & 2023 inc.
lebarsarthur/airflow-role
Ansible role to install Apache Airflow
lebarsarthur/ansible-role-incron
Ansible Role - incron
lebarsarthur/containers
Bioinformatics containers
lebarsarthur/covigator-ngs-pipeline
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
lebarsarthur/docker-kea
The ISC Kea DHCP server, Control Agent and DDNS running inside individual Docker containers.
lebarsarthur/iwc
Intergalactic Workflow Commission
lebarsarthur/openldap-ansible-role
OpenLDAP Ansible role
lebarsarthur/tripal_linkout
The Linkout module provides a web service for generation of external links
lebarsarthur/tronflow-vcf-postprocessing
A Nextflow variant normalization pipeline based on vt and bcftools
lebarsarthur/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples