Pinned Repositories
cohort-manager
Utility to manage and explore collections of phenotype data.
forestplot
Small JS script to create forestplots
forward
Python package for phenomic genetic studies.
gepyto
Python module providing reusable utility functions for human genomics.
grstools
A bioinformatics framework for the construction and evaluation of genetic risk scores
ml-mr
UKBPheWAS
geneparse
Clean interface to parse genotype files
genetest
Python package for efficient genetic association analyses
legaultmarc's Repositories
legaultmarc/gepyto
Python module providing reusable utility functions for human genomics.
legaultmarc/forestplot
Small JS script to create forestplots
legaultmarc/forward
Python package for phenomic genetic studies.
legaultmarc/grstools
A bioinformatics framework for the construction and evaluation of genetic risk scores
legaultmarc/cohort-manager
Utility to manage and explore collections of phenotype data.
legaultmarc/ml-mr
legaultmarc/UKBPheWAS
legaultmarc/genepa-rs
legaultmarc/AdversarialGMM
Minimax Estimation of Conditional Moment Models
legaultmarc/bim_inner_join
legaultmarc/cross_reference
Cross referencing for Google Docs
legaultmarc/databundle
legaultmarc/DeepFeatureIV
Code for "Learning Deep Features in Instrumental Variable Regression" (https://arxiv.org/abs/2010.07154)
legaultmarc/fastglm
Fast glm fitting via RcppEigen
legaultmarc/geneparse
Clean interface to parse genotype files
legaultmarc/gwas_summary_statistics
Database system to hold GWAS summary statistics.
legaultmarc/gym-minigrid
Minimalistic gridworld package for OpenAI Gym
legaultmarc/gym-minigrid-ice
Adds icy tiles and an environment to gym-minigrid
legaultmarc/hail
Scalable genomic data analysis.
legaultmarc/magenpy
Modeling and Analysis of (Statistical) Genetics data in python
legaultmarc/medical-reading-group
legaultmarc/miami_generator
A python tool to create beautiful Miami plots
legaultmarc/normality
Small stand-alone Python program to generate QQ plots from delimited text files. I use this to quickly evaluate the normality of continous variables.
legaultmarc/ocypod
Ocypod is a Redis-backed service for orchestrating background jobs. Clients/workers can be written in any language, using HTTP/JSON to queue/fetch jobs, store results, etc.
legaultmarc/prevalent-case-control
Incident + prevalent case control analysis
legaultmarc/py-qvalue
Python implementation of the Q-value
legaultmarc/pyplink
Python module to read binary Plink files.
legaultmarc/pytorch-genotypes
legaultmarc/rain
Interactive notebook of a solution to a simple Bayesian probability problem.
legaultmarc/region-plot
A tool to plot significant regions of GWAS