Repository code used for allele-specific gene expression analyses using single-cell RNA-seq data in Reinius/Mold et al. Nature Genetics 2016 (http://www.nature.com/ng/journal/v48/n11/abs/ng.3678.html).
There is also a collection of code used, but without usage instructions, available at https://github.com/danielramskold/Allelic_patterns_in_clonal_somatic_cells