lemonhhh

lemonhhh's Stars

• caleblareau/mtscATACpaper_reproducibility

  Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020

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• satijalab/seurat-data

  Dataset distribution for Seurat

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• caleblareau/mtscatac_protocol

  Repository for mtscATAC-seq protocol paper

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• dekkerlab/crane-nature-2015

  code associated with crane-nature-2015, 10.1038/nature14450

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• aryeelab/colon-dna-topology

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• bianshuhui/CRC_code

  Bioinformatics analysis code.

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• chenweng1991/redeemV

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• sankaranlab/redeemR

  R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

  6

• lemonhhh/Evaluate-scHi-C-imputation-methods

  Evaluate scHi-C imputation methods

  Language:Jupyter Notebook21

• TaoYang-dev/hicrep

  R package to evaluate the reproducibility of Hi-C data

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• mdozmorov/HiC_data

  A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

  16328

• xjtu-omics/SVision

  Detecting genome structural variants with deep learning in single molecule sequencing

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• ChatGPTNextWeb/ChatGPT-Next-Web

  A cross-platform ChatGPT/Gemini UI (Web / PWA / Linux / Win / MacOS). 一键拥有你自己的跨平台 ChatGPT/Gemini 应用。

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• chenweng1991/redeem_reproducibility

  Analysis reproducibility of Weng et al paper "Deciphering cell states and genealogies of human hematopoiesis"

  Language:Jupyter Notebook21

• parklab/HiNT

  HiC for copy Number variation and Translocation detection

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• nservant/cancer-hic-norm

  Normalization of cancer Hi-C data

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• BogdanBintu/ChromatinImaging

  Super-resolution chromatin tracing 2018

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• GaoLabXDU/DeCGR

  An interactive tool for deciphering CGRs from chromatin contact maps.

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• peterawe/CMScaller

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• cssmillie/ulcerative_colitis

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• bioinfo-biols/Flow2Spatial

  Flow2Spatial reconstructs spatial proteomics through transfer learning.

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• ay-lab/fithic

  Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

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• genomech/ExoC

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• labomics/midas

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• zhoujt1994/scHiCluster

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• nwpuzhengyan/SVcnn

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• PacificBiosciences/sv-benchmark

  Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data

  4220

• Sage-Bionetworks-Challenges/ICGC-TCGA-DREAM-Mutation-Calling-challenge-tools

  Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge

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• adamewing/bamsurgeon

  tools for adding mutations to existing .bam files, used for testing mutation callers

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• ay-lab/AveSim

  AveSim is a pipeline to simulate Hi-C matrices involving CNVs and translocations.

  Language:Perl51