Pinned Repositories
BCFind
A tool for brain cells localization from 3D microscopy images.
DANDI_Interactive_Plot_Selector
Contains python script (also jupyter notebook) to create DANDI Interactive Plot Selector HTML page.
dcimg
A Python module for accessing Hamamatsu DCIMG files
postProcessing_tools
This repository contains tools that are useful for post processing the acquired images.
QtLab
RAPID-AF
Real-time image-based autofocus for all wide-field optical microscopy systems
SomaSegmenter
AI-based tool for semantic segmentation of neuronal somas
SPIMlab
SPIMlab is a data acquisition and control software for Light Sheet Microscopy
st_fibre_analysis_hbp
A tool for fibre analysis using structure tensor analysis algorithms (HBP)
ZetaStitcher
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
lens-biophotonics's Repositories
lens-biophotonics/ZetaStitcher
ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.
lens-biophotonics/dcimg
A Python module for accessing Hamamatsu DCIMG files
lens-biophotonics/RAPID-AF
Real-time image-based autofocus for all wide-field optical microscopy systems
lens-biophotonics/BCFind
A tool for brain cells localization from 3D microscopy images.
lens-biophotonics/QtLab
lens-biophotonics/SPIMlab
SPIMlab is a data acquisition and control software for Light Sheet Microscopy
lens-biophotonics/SomaSegmenter
AI-based tool for semantic segmentation of neuronal somas
lens-biophotonics/st_fibre_analysis_hbp
A tool for fibre analysis using structure tensor analysis algorithms (HBP)
lens-biophotonics/atlas_tools
lens-biophotonics/biolabtools
lens-biophotonics/DANDI_Interactive_Plot_Selector
Contains python script (also jupyter notebook) to create DANDI Interactive Plot Selector HTML page.
lens-biophotonics/Foa3D
A tool for multiscale nerve fiber enhancement and 3D orientation analysis in large high-resolution volumetric brain tissue reconstructions.
lens-biophotonics/ij-trajectory-classifier
This plugin segments and classify diffusion trajectories
lens-biophotonics/mic
MIC (Microscopy Illumination Correction): an illumination correction tool for 3D microscopy.
lens-biophotonics/NeuCnt3D
An unsupervised tool for multiscale soma detection and counting in microscopy volume images.
lens-biophotonics/neuron_segmentation_model_hbp
CNN for automatic neuron segmentation
lens-biophotonics/open-fast-buffered-4ch-rf-gen
lens-biophotonics/OptroLab
lens-biophotonics/postProcessing_tools
This repository contains tools that are useful for post processing the acquired images.
lens-biophotonics/v3d_external
www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
lens-biophotonics/2P-LSFM-align
lens-biophotonics/bids-utils