Pinned Repositories
LineageTree
Module to read and "work" with lineage trees
napari-sc3D-viewer
A plugin to visualise 3D spatial single cell omics
ASTEC
Segmentation and Tracking algorithm from Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis
CNRS-scrape
I2AE
napari-boids
A napari plugin to look at boids
napari-turing
standalone-Mouse
TARDIS
Time-registration
leoguignard's Repositories
leoguignard/standalone-Mouse
leoguignard/I2AE
leoguignard/napari-boids
A napari plugin to look at boids
leoguignard/TARDIS
leoguignard/Time-registration
leoguignard/CNRS-scrape
leoguignard/Mouse-Atlas
Code for the article In toto imaging and reconstruction of post-implantation mouse development at the single-cell level
leoguignard/napari-turing
leoguignard/SVF
leoguignard/SVF2MaMuT
leoguignard/TGMMlibraries
leoguignard/ASTEC
Segmentation and Tracking algorithm from Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis
leoguignard/alien_invasion
Petit projet avec Gabriel
leoguignard/AmISelected
leoguignard/ASTEC-examples
Examples on how to use the output of ASTEC from Guignard, Fiuza et al.
leoguignard/BCOMS
BCOMS program
leoguignard/cell-cell-interaction-model
Cell-cell interaction model from Contact-dependent cell communications drive morphological invariance during ascidian embryogenesis
leoguignard/file-merge
For Daniel
leoguignard/ilastik2tlp
A small script to convert ilastik tracking output into tulip graphs
leoguignard/leoguignard
leoguignard/napari
napari: a fast, interactive, multi-dimensional image viewer for python
leoguignard/pkl2tlp
leoguignard/registration-container
leoguignard/sc-Analysis
notebook for single cell analysis
leoguignard/scientific-visualization-book
An open access book on scientific visualization using python and matplotlib
leoguignard/TLS-morpho
A script to measure Trunk like structure morphology