Pinned Repositories
3D-printing
Designs for 3D printed parts that were developed in the Zhuang Lab.
allen_brain
Code for the preparation, design, and analysis of MERFISH experiments of the brain samples sent from the Allen institute.
cold-storage-scripts
conda-envs
Files used to restore conda environments. I create the environments using "conda env export -n env_name > env_name.yml"
imaging-settings
Setting files for Hal, Kilroy Steve and Dave of imaging experiments in zhuang lab microscopes
MERCluster
merfish-parameters
Collection of scripts to launch MERlin jobs
MERFISH_analysis
Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
storm-analysis
STORM movie analysis code
leonardosepulveda's Repositories
leonardosepulveda/3D-printing
Designs for 3D printed parts that were developed in the Zhuang Lab.
leonardosepulveda/allen_brain
Code for the preparation, design, and analysis of MERFISH experiments of the brain samples sent from the Allen institute.
leonardosepulveda/cold-storage-scripts
leonardosepulveda/conda-envs
Files used to restore conda environments. I create the environments using "conda env export -n env_name > env_name.yml"
leonardosepulveda/imaging-settings
Setting files for Hal, Kilroy Steve and Dave of imaging experiments in zhuang lab microscopes
leonardosepulveda/MERCluster
leonardosepulveda/merfish-parameters
Collection of scripts to launch MERlin jobs
leonardosepulveda/MERFISH_analysis
Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
leonardosepulveda/MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
leonardosepulveda/storm-analysis
STORM movie analysis code
leonardosepulveda/storm-control
Microscope control software