Pinned Repositories
ABAMS
Code to analyse the Brain Architecture Management System and Allen Brain Atlas datasets.
CellTypesAging
datasharing
The Leek group guide to data sharing
polyprotein_stats
A small tool to test and visualize protein embeddings and amino acid proportions.
public
Java projects for neuroinformatics
SimpleGOAnalysisInR
GO Analysis In R
Zeisel_lists_reproduce
Zeisel_lists_reproduce
leonfrench's Repositories
leonfrench/polyprotein_stats
A small tool to test and visualize protein embeddings and amino acid proportions.
leonfrench/SimpleGOAnalysisInR
GO Analysis In R
leonfrench/Zeisel_lists_reproduce
Zeisel_lists_reproduce
leonfrench/AD-Allen-FDG
Transcriptomic analysis of brain hypometabolism links the cholinergic and gingipain hypotheses of Alzheimer’s disease pathogenesis
leonfrench/alleleIntegrator
R package to generate allele specific counts for scRNA data and use it to identify cancer cells
leonfrench/allenBrain
:mouse: Acquiring images from allen brain atlas, mouse ISH experiments in R.
leonfrench/barseq_analysis
Pipeline to analyze BARseq data
leonfrench/bio_embeddings
Get protein embeddings from protein sequences
leonfrench/CLP_shared_task_code
CLPsych shared task feature generation and TPOT based code for the 2017 submissions by Derek Howard, Jacob Ritchie, Geoffrey Woollard and Leon French. This repository contains no task data, only source code.
leonfrench/diagonal_blocks
Quick code for diagonal blocks
leonfrench/eRiskTask3Analyses
eRiskTask3Analyses
leonfrench/gingipain_release
leonfrench/GO_enrichment_tool
A tool used to analyze GO term enrichment in a set of ranked genes using AUROC scores.
leonfrench/gtex_enrichment
leonfrench/HumanHabenula
Transcriptomic characterization of the human habenula
leonfrench/hyper_geo_shiny
Hyper geometric tester
leonfrench/inactiveXX
Detect X-inactivation status in single cell transcriptomes
leonfrench/InsulaClaustrumSpecific
Transcriptomic Characterization of the Human Insular Cortex and Claustrum
leonfrench/kcni-school-envs
A collection of docker environments for the KCNI Summer School
leonfrench/localcolabfold
ColabFold on your local PC
leonfrench/MetaNeighbor
A method to rapidly assess cell type identity using both functional and random gene sets
leonfrench/MINI-EX
Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants
leonfrench/molecular_AN
leonfrench/orthrus_embed_viz
leonfrench/polygenic_GTEx_single_cell
leonfrench/polygenic_organelles
leonfrench/PubMedIDtoGate
Brain region text mining software that was designed to work well with GATE
leonfrench/pyMN
Python Implementation of MetaNeighbor scRNAseq Analysis Method
leonfrench/scwg
leonfrench/WhiteTextWeb