OmniAnomaly

Anomaly Detection for Multivariate Time Series through Modeling Temporal Dependence of Stochastic Variables

OmniAnomaly is a stochastic recurrent neural network model which glues Gated Recurrent Unit (GRU) and Variational auto-encoder (VAE), its core idea is to learn the normal patterns of multivariate time series and uses the reconstruction probability to do anomaly judgment.

Getting Started

Clone the repo

git clone https://github.com/smallcowbaby/OmniAnomaly && cd OmniAnomaly

Get data

SMD (Server Machine Dataset) is in folder ServerMachineDataset.

You can get the public datasets (SMAP and MSL) using:

wget https://s3-us-west-2.amazonaws.com/telemanom/data.zip && unzip data.zip && rm data.zip

cd data && wget https://raw.githubusercontent.com/khundman/telemanom/master/labeled_anomalies.csv

Install dependencies (with python 3.5+)

(virtualenv is recommended)

pip install -r requirements.txt

Preprocess the data

python data_process.py <dataset>

where <dataset> is one of SMAP, MSL or SMD.

Run the code

python main.py

If you want to change the default configuration, you can edit ExpConfig in main.py or overwrite the config in main.py using command line args. For example:

python main.py --dataset='MSL' --max_epoch=20

Data

Dataset Information

Dataset name	Number of entities	Number of dimensions	Training set size	Testing set size	Anomaly ratio(%)
SMAP	55	25	135183	427617	13.13
MSL	27	55	58317	73729	10.72
SMD	28	38	708405	708420	4.16

SMAP and MSL

SMAP (Soil Moisture Active Passive satellite) and MSL (Mars Science Laboratory rover) are two public datasets from NASA.

For more details, see: https://github.com/khundman/telemanom

SMD

SMD (Server Machine Dataset) is a new 5-week-long dataset. We collected it from a large Internet company. This dataset contains 3 groups of entities. Each of them is named by machine-<group_index>-<index>.

SMD is made up by data from 28 different machines, and the 28 subsets should be trained and tested separately. For each of these subsets, we divide it into two parts of equal length for training and testing. We provide labels for whether a point is an anomaly and the dimensions contribute to every anomaly.

Thus SMD is made up by the following parts:

train: The former half part of the dataset.
test: The latter half part of the dataset.
test_label: The label of the test set. It denotes whether a point is an anomaly.
interpretation_label: The lists of dimensions contribute to each anomaly.

concatenate

Processing

With the default configuration, main.py follows these steps:

Train the model with training set, and validate at a fixed frequency. Early stop method is applied by default.
Test the model on both training set and testing set, and save anomaly score in train_score.pkl and test_score.pkl.
Find the best F1 score on the testing set, and print the results.
Init POT model on train_score to find the threshold of anomaly score, and using this threshold to predict on the testing set.

Training loss

The figure below are the training loss of our model on MSL and SMAP, which indicates that our model can converge well on these two datasets.

leonnewton/OmniAnomaly