leosfan

My academic and research history have significantly influenced my desire to work in chemical, medical, and biological research areas.

BBI LIFE SCIENCES CORPORATIONShanghai, China

Pinned Repositories

2022-qupath-cell-detection
Images & code to visualize to illustrate the challenges image analysis in pathology
Language:Groovy00
3D_UNet_MRI
TensorFlow implementation of 3D UNet for medical image segmentation
Language:Jupyter Notebook00
ANGEL
Robust Open Reading Frame prediction (ANGLE re-implementation)
Language:Python00
barcoding
Lima - Demultiplex Barcoded PacBio Samples
Language:R00
cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Language:Python00
Cell-Neighborhood-Analysis
Language:Python00
fastq2dcc
Install the GeoMxNGSPipeline_Linux_2.0.0.16 tool from Nanostring/illumina to docker container, and convert it to Singularity.
10
nnUNet
Trying to fix docker related issues when deploying in a container
Language:Python00
SQANTI2
Private repo for Liz's modified SQANTI
Language:Python10

leosfan's Repositories

leosfan/fastq2dcc
Install the GeoMxNGSPipeline_Linux_2.0.0.16 tool from Nanostring/illumina to docker container, and convert it to Singularity.
10
leosfan/2022-qupath-cell-detection
Images & code to visualize to illustrate the challenges image analysis in pathology
Language:Groovy00
leosfan/Cell-Neighborhood-Analysis
Language:Python00
leosfan/CWL
0 1 00
leosfan/neo-antigen
00
leosfan/nnUNet
Trying to fix docker related issues when deploying in a container
Language:Python00
leosfan/scRNA
00
leosfan/center-dot
Center Dot is a Windows application that renders a dot in the center of the screen. Useful for PC games that do not provide a crosshair.
Language:C++0 0
leosfan/ck_virtual_staining_paper
transform H&E image into CK image using GAN (virtual staining)
leosfan/Data_Science_Industrial_Practice
《数据科学工程实践》一书的Jupyter Notebook库，以及交流园地。
leosfan/DataScienceStudyNotes
这个仓库保管从（数据科学学习手札69）开始的所有代码、数据等相关附件内容
leosfan/DigiPathAI
Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
leosfan/ECDICT
Free English to Chinese Dictionary Database
leosfan/flutter-bible
A Bible app built in flutter
leosfan/flutter-plugins
🧱 Flutter plugins used in Mixin Messenger.
leosfan/FrequencyWords
Repository for Frequency Word List Generator and processed files
leosfan/Image_Processing
Image Processing techniques using OpenCV and Python.
leosfan/io_lib
Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.
leosfan/mysql2sqlite
Converts MySQL dump to SQLite3 compatible dump
leosfan/PaddleSeg
Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.
leosfan/PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
leosfan/proximity-analysis
These ArcGIS Python scripts enable various types of proximity analysis leveraging spatial weights matrices & other proximity tools.
leosfan/PythonPracticalSkills
存放「Python实用秘技」系列文章对应附件
leosfan/rstudio-server-conda
Run Rstudio Server in a conda environment
leosfan/spatial-analytics
leosfan/SpatialScore
R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma".
leosfan/sqlite3.dart
sqlite3 bindings for Dart
leosfan/stardist
StarDist - Object Detection with Star-convex Shapes
leosfan/TechTalk
When a UI framework meets a game engine
leosfan/tokenizer_flutter_demo