leovandriel/ramachandran

Make Ramachandran plots from pdb files

ramachandran

Make Ramachandran plots from pdb files.

Install

pip install -r requirements.txt

Parsing the chain

To parse 3u8z to a sequence of rotations:

./bin/parse 3u8z

Protein files are automatically downloaded from the RCSB Protein Data Bank.

Plot rotations and Ramachandran

To plot 3u8z:

./bin/plot 3u8z

To plot only for Proline:

./bin/plot 3u8z pro

Use --log to scale y axis:

./bin/plot 3u8z --log

Other stuff

To list all local files:

./bin/list

By default we use .pdb files. Some structures are only available in the CIF format. Use --format to specify:

./bin/plot --format cif