letunglam1991

letunglam1991's Stars

• npavlovikj/ProkEvo

  ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.

  Language:Jupyter Notebook185

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.3k612

• nf-core/sarek

  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  Language:Nextflow424430

• NationalGenomicsInfrastructure/TACA

  Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

  Language:Python1416

• Dfam-consortium/RepeatMasker

  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

  Language:Perl24449

• jtamames/SqueezeMeta

  A complete pipeline for metagenomic analysis

  Language:C39683

• genome/bam-readcount

  Count bases in BAM/CRAM files

  Language:CMake31496

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python48459

• Magdoll/cDNA_Cupcake

  Miscellaneous collection of Python and R scripts for processing Iso-Seq data

  Language:Python261103

• gpertea/stringtie

  Transcript assembly and quantification for RNA-Seq

  Language:C++41479

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.6k555

• sanger-pathogens/circlator

  A tool to circularize genome assemblies

  Language:Python23758

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.3k738

• CompSynBioLab-KoreaUniv/FunGAP

  FunGAP: fungal Genome Annotation Pipeline

  Language:Python10935

• Gaius-Augustus/BRAKER

  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

  Language:Perl38284

• marbl/canu

  A single molecule sequence assembler for genomes large and small.

  Language:C++669179