/cs279

protein_folding_website

Primary LanguagePythonMIT LicenseMIT

Project README

Overview

This project utilizes pymol_code to generate a script that is executed through PyMOL. The script populates data in the static_folder, which is then used by app.py to create a Flask-based webpage. The webpage is currently hosted here. To apply this to your own protein data, you need to populate the data folder with your PDB files. Running the pymol_code from the PyMOL desktop application triggers the update process, and the Flask webpage will automatically reflect these updates on your hosting platform.

Steps to Use

  1. Prepare Your Protein Data:

    • Place your PDB files in the data folder.

  2. Running the PyMOL Script:

    • Open the PyMOL application.
    • Execute the pymol_code script.
    • This script processes your PDB files and fills the static_folder with the necessary data.

  3. Generating the Flask Webpage:

    • The app.py file uses the data from static_folder to create a Flask-oriented webpage.

Authors

  • May Levin
  • Emma Williamson
  • Joseph Allen

References

  • Y. Zhang and J. Skolnick, Nucl. Acids Res. 2005 33, 2302-9 TM-align