Pinned Repositories
proteomics-sample-metadata
The Proteomics Experimental Design file format: Standard for experimental design annotation
biolccc
libBioLCCC is an open source C++ library for prediction of peptide and protein retention times in liquid chromatography. It is based on BioLCCC (Liquid Chromatography of Biomacromolecules at Critical Conditions) model of liquid chromatography of peptides and proteins. pyteomics.biolccc is a Python library based on libBioLCCC The project documentation is hosted at http://packages.python.org/pyteomics.biolccc, pyteomics.biolccc can be downloaded at http://pypi.python.org/pypi/pyteomics.biolccc
identipy
identipy_server
pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
pyteomics-utils
Simple but handy CLI tools for everyday data analysis tasks
vimrc
The vimrc file I use on all machines.
scavager
aa_stat
AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.
levitsky's Repositories
levitsky/pyteomics
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common tasks in proteomics data analysis.
levitsky/identipy
levitsky/biolccc
libBioLCCC is an open source C++ library for prediction of peptide and protein retention times in liquid chromatography. It is based on BioLCCC (Liquid Chromatography of Biomacromolecules at Critical Conditions) model of liquid chromatography of peptides and proteins. pyteomics.biolccc is a Python library based on libBioLCCC The project documentation is hosted at http://packages.python.org/pyteomics.biolccc, pyteomics.biolccc can be downloaded at http://pypi.python.org/pypi/pyteomics.biolccc
levitsky/identipy_server
levitsky/pyteomics-utils
Simple but handy CLI tools for everyday data analysis tasks
levitsky/vimrc
The vimrc file I use on all machines.
levitsky/aa_stat
AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.
levitsky/biolccc_backup
Archive of repository data from BitBucket
levitsky/biosaur2
levitsky/bitbucket-hg-exporter
A tool for exporting all project data from a BitBucket mercurial repository
levitsky/bitbucket_backup
Archive of repository data from BitBucket
levitsky/diffacto
levitsky/groupfilter
levitsky/IQMMA
Project improves quantitative analysis by applying multiple feature detection tools and pick the best from their results.
levitsky/Metrics
levitsky/numpy
Numpy main repository
levitsky/proteomics-metadata-standard
The Proteomics Experimental Design file format: Standard for experimental design annotation
levitsky/pyteomics.cythonize
Cython Implementations of Common Pyteomics Functions
levitsky/python-wheels-manylinux-build
GitHub Action to build Python manylinux wheels
levitsky/sdrf-pipelines
A repository to convert SDRF proteomics files into pipelines config files
levitsky/specpride
Analysis of different consensus spectrum construction methods
levitsky/theorchromo
Source code for theorchromo.ru, a Web tool for retention time prediction based on pyteomics.biolccc