Department of Microbiome Science at the MPI for Biology

Pinned Repositories

animal_gut_16S-uni
Language:Jupyter Notebook8 3 04
codiversification
Code and notes for the Ley Lab's codiversification paper.
Language:Jupyter Notebook4 5 01
DeepMAsED
Deep learning for Metagenome Assembly Error Detection
Language:Jupyter Notebook25 4 96
endoR
Code and manual of the endoR R-package (Ruaud et al, in preparation).
Language:Jupyter Notebook12 3 00
pyTecanFluent
Python interface to TECAN Fluent liquid handling robot
Language:Python18 5 02
resmico
Identifying misassemblies via deep learning
Language:Jupyter Notebook10 6 151
Struo
Ley Lab MetaGenome Profiler DataBase generator
Language:Jupyter Notebook45 7 134
Struo2
Scalable creating/updating of metagenome profiling databases
Language:Jupyter Notebook57 5 478
SynTracker
SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same species) using genome synteny.
Language:Python23 3 15
TwinsUK_virome
Jupyter notebooks and scripts describing the data analysis process in the TwinsUK_virome project
Language:Jupyter Notebook6 4 13

Department of Microbiome Science at the MPI for Biology 's Repositories

leylabmpi/DeepMAsED
Deep learning for Metagenome Assembly Error Detection
Language:Jupyter Notebook25 4 96
leylabmpi/animal_gut_16S-uni
Language:Jupyter Notebook8 3 04
leylabmpi/TwinsUK_virome
Jupyter notebooks and scripts describing the data analysis process in the TwinsUK_virome project
Language:Jupyter Notebook6 4 13
leylabmpi/animal_gut_metagenome_assembly
Code associated with the Ley Lab animal gut metagenome assembly project
Language:Jupyter Notebook2 4 0
leylabmpi/snakemake_profiles
snakemake profiles for cluster configuration
Language:Python2 3 01
leylabmpi/conda-recipes
Conda recipes for the leylab channel
Language:Shell
leylabmpi/conda_env_setup
Installation & setup of conda environments for microbiome data analyses
Language:Shell3 0
leylabmpi/data_analysis_workshops
Data analysis workshop material
Language:Jupyter Notebook
leylabmpi/demuxShiny
Shiny apps to help with sequence data demultiplexing
Language:Python
leylabmpi/dkw_thesis_notebooks
Language:HTML2 0
leylabmpi/leylab_pipelines
General bioinformatic pipelines associated with the Ley Lab at the MPI in Tuebingen
Language:Python3 0
leylabmpi/LeyLabRUtils
R utility package
Language:R
leylabmpi/Methanomassilii
Language:Jupyter Notebook1
leylabmpi/microbio_aDiv
Language:Jupyter Notebook
leylabmpi/serverAdminShiny
Simple shiny apps for server administration
Language:R3 0
leylabmpi/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python
leylabmpi/Welter_et_al_2020
All data and code associated with Welter et al. 2020
Language:HTML1 0