Pinned Repositories
abi
ASV_dada2_chunck
Rscript allowing Dada2 taxonomy affiliation to run in chuncks. It reduces the memory requirements and is faster.
Automatic_transcriptome_analysis
biopycourse
Python short course for graduates in biology and biochemistry
Degprimer_design
Degprimer_specificity
EMAGC
Eukaryotic Metagenome-Assembled Genome Gene Calling - ab initio gene finding in Eukaryota MAGs
Euka_RNA_Input_POGENOM
Test - Adapting Input pogenom pipeline to RNA seqs and eukaryotic genomes
EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
Gene_Catalog_Rshiny
Rshiny app - Gene catalog using mix-assembly approach
lfdelzam's Repositories
lfdelzam/abi
lfdelzam/ASV_dada2_chunck
Rscript allowing Dada2 taxonomy affiliation to run in chuncks. It reduces the memory requirements and is faster.
lfdelzam/Automatic_transcriptome_analysis
lfdelzam/biopycourse
Python short course for graduates in biology and biochemistry
lfdelzam/Degprimer_design
lfdelzam/Degprimer_specificity
lfdelzam/EMAGC
Eukaryotic Metagenome-Assembled Genome Gene Calling - ab initio gene finding in Eukaryota MAGs
lfdelzam/Euka_RNA_Input_POGENOM
Test - Adapting Input pogenom pipeline to RNA seqs and eukaryotic genomes
lfdelzam/EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
lfdelzam/Gene_Catalog_Rshiny
Rshiny app - Gene catalog using mix-assembly approach
lfdelzam/MASTER
Workflow, README file and scripts from my master degree project in Bioinformatics - Lund University
lfdelzam/mix_assembly_pipeline
Mix_assembly gene catalog pipeline
lfdelzam/ML_envgen
ML on Envgen datasets
lfdelzam/phyloBOTL
Phylogeny-based Ortholog-trait Linkage pipeline
lfdelzam/POGENOM
Population genomics from metagenomes
lfdelzam/toolbox
Various scripts used at the EnvGen group, directed towards metagenomic analysis.