lguillier/matrix2association

The R script ‘matrix2association’ estimates statistical differences between two lists of pairwise differences existing across all genomes known to be involved in a studied outbreak (i.e. first list of related genomes) and between these reference genomes and an unknown genome (i.e. second list)

matrix2association

The R script ‘matrix2association’ estimates statistical differences between two lists of pairwise differences existing across all genomes known to be involved in a studied outbreak (i.e. first list of related genomes) and between these reference genomes and an unknown genome (i.e. second list).

Input data

Pairwise distance matrice

List of IDs of strains known to be clustered