What are the usage parameter of miniasm for aligning a reference.fasta and a PAF file?

Question

What are the usage parameter of miniasm for aligning a reference.fasta and a PAF file?

Closed this issue 9 years ago · 1 comments

miniasm/miniasm -f reads.fq reads.paf.gz > reads.gfa
here reads.fq is a read file. But I use a reference file in stead of read file what parameters would miniasm need?

Answer 1 · 2016-09-08T14:34:42.000Z

Miniasm does de novo assembly only. It does not work with reference-guided assembly.