lh3/miniasm

Issues

• Next Step after generating assembly.gfa file.

  #94 opened a year ago by ufaroooq
  4

• Not results generating?

  #87 opened 5 years ago by sekhwal
  5

• Minidot invalid option -- 'D'

  #95 opened 7 months ago by JKing2000
  0

• Empty gfa file after miniasm run

  #83 opened 5 years ago by aastha-v
  4

• No output of Minisam?

  #50 opened 6 years ago by HuJane
  8

• miniasm prints no gfa if PAF file contains self-mapped read

  #78 opened 5 years ago by vellamike
  3

• empty gfa with "0 sequences and 0 hits remain after containment removal"

  #56 opened 6 years ago by JustinaMoon
  4

• Assemble of DNA and RNA amplicons from PacBio run

  #92 opened 2 years ago by s-t-calus
  1

• combine replicates

  #90 opened 2 years ago by mbartl13
  0

• miniasm output with NNNN's

  #65 opened 6 years ago by GeoMicroSoares
  3

• The main disadvantages of Miniasm compared to more modern assemblers

  #89 opened 3 years ago by shelkmike
  0

• Empty paf file. No error message.

  #88 opened 3 years ago by Yang-Wang-2020
  0

• Segmentation fault (core dumped) while running miniasm

  #73 opened 5 years ago by ShuChen1986
  1

• PAF Format detail

  #86 opened 5 years ago by sd880131
  1

• Miniasm killed process

  #85 opened 5 years ago by vilperte
  0

• Decreasing minimum required read coverage for assembly

  #84 opened 5 years ago by chocotwig
  0

• Hello there,

  #76 opened 5 years ago by shehongbing
  3

• Conceptual Question About Miniasm

  #79 opened 5 years ago by chocotwig
  0

• Number of rounds for short overlap removal

  #77 opened 5 years ago by snurk
  0

• empty .gfa

  #47 opened 7 years ago by Raistrawby
  1

• Can miniasm be used for contigs

  #75 opened 5 years ago by SilasK
  1

• miniasm segmentation fault

  #48 opened 7 years ago by imneuro
  8

• Explanation of GFA file format

  #71 opened 5 years ago by nhartwic
  1

• No output in GFA file after miniasm run.

  #70 opened 5 years ago by tayabsoomro
  4

• PAF end coordinates

  #72 opened 5 years ago by johnomics
  2

• how to calculated identity?

  #69 opened 5 years ago by LinXialab
  1

• minimap2 + miniasm + racon pipeline produces bigger genome assembly than expected

  #60 opened 6 years ago by MehmetGoktay
  1

• using a fragmented genome as an input

  #68 opened 6 years ago by dcopetti
  0

• Quality scores during mapping

  #67 opened 6 years ago by ardakdemir
  2

• miniasm stop at step1 and error with 段错误(吐核)(core dump)

  #66 opened 6 years ago by y842739756
  0

• GFA with '*' sequences

  #61 opened 6 years ago by sage-wright
  2

• nanopore output files: demultiplexed or non

  #64 opened 6 years ago by oatesa
  0

• Coverage per contig?

  #63 opened 6 years ago by cjchen5
  0

• Performing local assembly with only a few number of reads

  #62 opened 6 years ago by OscarAspelin
  3

• assembly for multiple fastq files

  #59 opened 6 years ago by xingjianfeng100
  0

• explanation of GFA output

  #58 opened 6 years ago by lfaino
  1

• Add read count (RC) attribute to GFA [feature request]

  #42 opened 7 years ago by sjackman
  2

• minidot can't plot right

  #57 opened 6 years ago
  0

• miniasm error

  #55 opened 6 years ago by Xuelei-Dai
  0

• Please tag a stable release

  #43 opened 6 years ago by sjackman
  5

• max divergence optimization

  #54 opened 6 years ago by EarlyEvol
  0

• Minimap or Minimap2

  #53 opened 6 years ago by jjkoehorst
  4

• Do you keep on tagging releases

  #51 opened 6 years ago by tillea
  2

• Working with corrected Nanopore reads?

  #49 opened 6 years ago by moold
  1

• miniasm output with 0 with test data

  #52 opened 6 years ago by ljw90607
  0

• How to estimate computational resource?

  #46 opened 7 years ago by imneuro
  0

• No sequences in gfa - unable to convert to fasta

  #45 opened 7 years ago by lpryszcz
  1

• Reassembling polished unitigs with the raw reads

  #44 opened 7 years ago by sjackman
  0

• Unitig id suffix 'l' vs 'c'

  #41 opened 7 years ago by audrina
  1

• High scoring segment pairs

  #40 opened 7 years ago by rehab-fouad
  5