lh3/miniasm

Issues

• Color output

  #39 opened 7 years ago
  0

• Can minimap and miniasm be used for human genome assembly?

  #38 opened 7 years ago
  1

• Assembling mixtures of PacBio and Nanopore reads

  #37 opened 7 years ago
  1

• Segmentation fault

  #36 opened 7 years ago
  8

• Repeat masking

  #35 opened 7 years ago
  0

• Error message when providing wrong filenames

  #34 opened 7 years ago
  0

• improving assembly graph contiguity ("connected component N50")

  #33 opened 7 years ago
  17

• miniasm seems to not work with minimap2 -x ava-ont PAF files of latest minimap2 version?

  #32 opened 7 years ago
  6

• multithreaded

  #31 opened 7 years ago
  1

• genomes longer than 100MB

  #30 opened 7 years ago
  0

• minidot plot in specific order

  #29 opened 7 years ago
  0

• Core Dumped while Generating Unitigs

  #27 opened 7 years ago
  7

• failed at index.c

  #26 opened 7 years ago
  0

• Short read lengths - genome assembly

  #25 opened 8 years ago
  0

• miniasm: asm.c:267: ma_ug_seq: Assertion `sub[id].e - sub[id].s <= ks->seq.l' failed.

  #24 opened 8 years ago
  5

• Miniasm outputs genome with 100% Ns

  #22 opened 7 years ago
  0

• Miniasm not making it past Step 1

  #21 opened 8 years ago
  2

• miniasm over corrected long reads

  #20 opened 8 years ago
  1

• Segmentation fault at step 1

  #19 opened 8 years ago
  4

• layout step produces empty gfa

  #18 opened 8 years ago
  7

• What are the usage parameter of miniasm for aligning a reference.fasta and a PAF file?

  #17 opened 8 years ago
  1

• Parameter tweaking for assembling error-corrected reads

  #16 opened 8 years ago
  4

• sam2paf javascript code

  #15 opened 9 years ago
  2

• GFA usage help

  #14 opened 9 years ago
  1

• GFA file input to Bandage

  #13 opened 9 years ago
  1

• Core Dump error while generating unitigs(Step 5)

  #12 opened 9 years ago
  4

• assembling canu corrected reads

  #11 opened 9 years ago
  7

• Document GFA `a` record

  #10 opened 9 years ago
  2

• output string graph in GFA format

  #8 opened 9 years ago
  2

• Segmentation fault happened at step3

  #7 opened 8 years ago
  9

• Assertion error

  #6 opened 9 years ago
  3

• assembling short references

  #5 opened 9 years ago
  7

• bad gateway for test data

  #4 opened 9 years ago
  3

• miniasm for large genome with daligner overlaps

  #3 opened 9 years ago
  16

• P6C4 devnet: Assertion error

  #2 opened 9 years ago
  2

• Add version flag -V

  #1 opened 9 years ago
  1