Pinned Repositories
12306
12306智能刷票，订票
3d-dna
3D de novo assembly (3D DNA) pipeline
A-pro
ASTRAL for PaRalogs and Orthologs
AGAT
Another Gtf/Gff Analysis Toolkit
agc
Assembled Genomes Compressor
AGWG-merge
ArchaicSeeker2.0
ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.
Chinese_indicine_pan-genome_project_scripts_and_piplines
Chinese indicine cattle pan-genome project scripts and piplines
DESCHRAMBLER
selscan
Haplotype based scans for selection
Xuelei-Dai's Repositories
Xuelei-Dai/agc
Assembled Genomes Compressor
Xuelei-Dai/cnvkit
Copy number variant detection from targeted DNA sequencing
Xuelei-Dai/DeepMEI
A CNN model to identify MEIs in WGS
Xuelei-Dai/EarlGrey
Earl Grey: A fully automated TE curation and annotation pipeline
Xuelei-Dai/ECOLE
Xuelei-Dai/EMMA
an ensemble usage of MAFFT-linsi --add on large datasets
Xuelei-Dai/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
Xuelei-Dai/GetOrganelle
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
Xuelei-Dai/gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
Xuelei-Dai/GhostKnockoffGWAS
Package for analyzing GWAS summary statistics data
Xuelei-Dai/Helixer
Using Deep Learning to predict gene annotations
Xuelei-Dai/iSeq
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
Xuelei-Dai/long-read-1kg
Code written for the long-read 1KG project
Xuelei-Dai/Metabuli
Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
Xuelei-Dai/Minimac4
Xuelei-Dai/ModDotPlot
Xuelei-Dai/paf2dotplot
Draw a dot plot from a paf alignment
Xuelei-Dai/panacus
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Xuelei-Dai/pangene
Constructing a pangenome gene graph
Xuelei-Dai/pgr-tk
PGR-TK: Pangenome Research Tool Kit
Xuelei-Dai/PhyloAln
PhyloAln: a convenient reference-based tool to align sequences and high-throughput reads for phylogeny and evolution in the omic era
Xuelei-Dai/qtltools
A complete tool set for molecular QTL discovery and analysis
Xuelei-Dai/RectChr
Multi-level visualization of genomic statistical variables on rectangular chromosomes
Xuelei-Dai/rmats-turbo
Xuelei-Dai/rmats2sashimiplot
Xuelei-Dai/rMVP
:postbox: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study
Xuelei-Dai/SVarp
Phased structural variant discovery in pangenomes
Xuelei-Dai/tensorqtl
Ultrafast GPU-enabled QTL mapper
Xuelei-Dai/VCF2PCACluster
A new simple and efficient software to PCA and Cluster For popolation VCF File
Xuelei-Dai/xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics