Xuelei-Dai

Northwest A&F UniversityYangling, Shaanxi 712100, China

Pinned Repositories

12306
12306智能刷票，订票
Language:Python0 0 00
3d-dna
3D de novo assembly (3D DNA) pipeline
Language:Shell0 0 00
A-pro
ASTRAL for PaRalogs and Orthologs
Language:Java0 0 00
AGAT
Another Gtf/Gff Analysis Toolkit
Language:Perl0 0 00
agc
Assembled Genomes Compressor
Language:C++0 0 00
AGWG-merge
Language:Shell0 0 00
ArchaicSeeker2.0
ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.
Language:C++1 0 00
Chinese_indicine_pan-genome_project_scripts_and_piplines
Chinese indicine cattle pan-genome project scripts and piplines
Language:Python6 1 02
DESCHRAMBLER
Language:Perl20
selscan
Haplotype based scans for selection
Language:C10

Xuelei-Dai's Repositories

Xuelei-Dai/12306
12306智能刷票，订票
Language:Python0 0 00
Xuelei-Dai/allhic-1
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
Language:Jupyter Notebook0 0 00
Xuelei-Dai/Augustus
Genome annotation with AUGUSTUS
Language:C++0 0
Xuelei-Dai/bioNotes
Language:Python0 0
Xuelei-Dai/BRAKER
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
Xuelei-Dai/CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
Language:C++0 0
Xuelei-Dai/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
Language:Python0 0
Xuelei-Dai/dna-nn
Model and predict short DNA sequence features with neural networks
Language:C0 0
Xuelei-Dai/fanqiang
翻墙-科学上网
Xuelei-Dai/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
Xuelei-Dai/ggplot2
An implementation of the Grammar of Graphics in R
Language:R0 0
Xuelei-Dai/HAPLEX
Combinatorial and statistical prediction of gene expression from haplotype sequence
Xuelei-Dai/interproscan
Language:Java0 0
Xuelei-Dai/IsoSeq
IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
0 0
Xuelei-Dai/IsoSeq_SA3nUP
Documentation and Developers Code Base for Iso-Seq SMRTAnalysis 3.x and beyond
0 0
Xuelei-Dai/jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
Xuelei-Dai/MakeHub
Fully automated generation of UCSC assembly hubs
Xuelei-Dai/manta
Structural variant and indel caller for mapped sequencing data
Xuelei-Dai/MECAT2
Language:C++0 0
Xuelei-Dai/OrthoFinder
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
Language:Python0 0
Xuelei-Dai/paragraph
Graph realignment tools for structural variants
Language:C++0 0
Xuelei-Dai/PASApipeline
PASA software
Language:Perl
Xuelei-Dai/pb-assembly
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
Language:Python0 0
Xuelei-Dai/py12306
🚂 12306 购票助手，支持集群，多账号，多任务购票以及 Web 页面管理
Language:Python0 0
Xuelei-Dai/Python-100-Days
Python - 100天从新手到大师
Xuelei-Dai/RaGOO
Fast Reference-Guided Scaffolding of Genome Assembly Contigs
Language:Python0 0
Xuelei-Dai/sv-benchmark
Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
Xuelei-Dai/svtyper
Bayesian genotyper for structural variants
Xuelei-Dai/TransDecoder
TransDecoder source
Language:Perl
Xuelei-Dai/wgd
Python package and CLI for whole-genome duplication analyses