how to calculated identity?

[LinXialab]

Hi,

Recently, we are comparing minimap2 and NGMLR.
Could you please tell us how does the number followed "dv:f:" generate?
For NGMLR, Fritz suggested us calculated the identity as follow:
identity = (the number of sequence matches)/(the total number of sequence matches, mismatches, insertions and deletions in the alignment).

Looking forward your reply!
Lin

[lh3]

Please create an issue at the minimap2 repo.