xingjianfeng100

Pinned Repositories

4DTv
Language:Perl0 0 00
CAFE5
Version 5 of the CAFE phylogenetics software
Language:C++0 0 00
cafe_tutorial
Language:HTML0 0 00
Diamond
Diamond is a python daemon that collects system metrics and publishes them to Graphite (and others). It is capable of collecting cpu, memory, network, i/o, load and disk metrics. Additionally, it features an API for implementing custom collectors for gathering metrics from almost any source.
Language:Python0 0 00
EDTA
Extensive de-novo TE Annotator
Language:Perl00
gatk
Official code repository for GATK versions 4 and up
Language:Java0 0 00
geta
Language:Perl0 0 00
googletest
GoogleTest - Google Testing and Mocking Framework
Language:C++00
hal
Hierarchical Alignment Format
Language:C++0 0 00
hypo-assembler
Language:C00

xingjianfeng100's Repositories

xingjianfeng100/4DTv
Language:Perl0 0 00
xingjianfeng100/CAFE5
Version 5 of the CAFE phylogenetics software
Language:C++0 0 00
xingjianfeng100/cafe_tutorial
Language:HTML0 0 00
xingjianfeng100/Diamond
Diamond is a python daemon that collects system metrics and publishes them to Graphite (and others). It is capable of collecting cpu, memory, network, i/o, load and disk metrics. Additionally, it features an API for implementing custom collectors for gathering metrics from almost any source.
Language:Python0 0 00
xingjianfeng100/EDTA
Extensive de-novo TE Annotator
Language:Perl00
xingjianfeng100/gatk
Official code repository for GATK versions 4 and up
Language:Java0 0 00
xingjianfeng100/geta
Language:Perl0 0 00
xingjianfeng100/googletest
GoogleTest - Google Testing and Mocking Framework
Language:C++00
xingjianfeng100/hal
Hierarchical Alignment Format
Language:C++0 0 00
xingjianfeng100/hypo-assembler
Language:C00
xingjianfeng100/interproscan
Language:C0 0 00
xingjianfeng100/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
Language:Python0 0 00
xingjianfeng100/MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
Language:C++0 0 00
xingjianfeng100/MODAS
MODAS: Multi-Omics Data Association Study toolkit
Language:Python0 0 00
xingjianfeng100/libdivsufsort
A lightweight suffix-sorting library
xingjianfeng100/LTR_FINDER_parallel
A parallel wrapper for LTR_FINDER
Language:Perl0 0
xingjianfeng100/LTR_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
xingjianfeng100/MODAS_data
Language:Python0 0
xingjianfeng100/pftools3
A suite of tools to build and search generalized profiles
xingjianfeng100/phasebook
Haplotype aware de novo assembly of diploid genome from long reads
Language:C++0 0
xingjianfeng100/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Language:C++0 0
xingjianfeng100/sdsl-lite
Succinct Data Structure Library 2.0
xingjianfeng100/SeqLib
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
Language:C++0 0
xingjianfeng100/sonLib
Small general purpose library for C and Python with focus on bioinformatics.
xingjianfeng100/SuiteSparse
The official SuiteSparse library: a suite of sparse matrix algorithms authored or co-authored by Tim Davis, Texas A&M University.
xingjianfeng100/TO-GCN
Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data