liameabbott
Data & Analytics Engineering | Bioinformatics | Machine Learning
@IntegralTx - Valo HealthCambridge, MA
Pinned Repositories
annotationdb
Hail annotation database scripts and metadata
bayesMCMC_R_package
R package implementing Metropolis-Hastings and Gibbs sampler MCMC algorithms
bulk-rna-seq-pipeline
cloudtools
Scripts for working with Google Cloud Dataproc service
data_manipulation_in_python
Collection of data retrieval and manipulation projects using Python
drop-seq-tools-pipeline
dsbowl2018
hail
Scalable genetic data analysis.
UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
liameabbott's Repositories
liameabbott/bayesMCMC_R_package
R package implementing Metropolis-Hastings and Gibbs sampler MCMC algorithms
liameabbott/annotationdb
Hail annotation database scripts and metadata
liameabbott/bulk-rna-seq-pipeline
liameabbott/cloudtools
Scripts for working with Google Cloud Dataproc service
liameabbott/data_manipulation_in_python
Collection of data retrieval and manipulation projects using Python
liameabbott/drop-seq-tools-pipeline
liameabbott/dsbowl2018
liameabbott/hail
Scalable genetic data analysis.
liameabbott/UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
liameabbott/epiApp
liameabbott/liameabbott.github.io
liameabbott/machine_learning_in_R
Collection of projects implemented in R
liameabbott/medicare_state_comparison_analysis
A comparison of Medicare payment data in Massachusetts and Tennessee in 2013
liameabbott/named_entity_recognition
liameabbott/PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
liameabbott/reference-database
liameabbott/rosalind
Collection of solutions for bioinformatics coding challenges from the Rosalind project (see rosalind.info)
liameabbott/SpiecEasi
Sparse InversE Covariance estimation for Ecological Association and Statistical Inference
liameabbott/statgen-utils
Utility scripts for typical statistical genetics tasks.
liameabbott/statistical_computing_cpp
Collection of programs related to statistical computing written in C++
liameabbott/tb-gene-signature-pipeline
liameabbott/useful-code
liameabbott/yelp_bigram_analysis_project
An analysis of bigrams occurring in the user reviews of bars in the Yelp Dataset Challenge dataset