/sysname_to_gene

Tool for parsing and updating Agilent Xenopus 4x44K microarray SystematicIDs to official gene names

Primary LanguagePythonMIT LicenseMIT

sysname_to_gene

Tool for parsing and updating Agilent Xenopus 4x44K microarray SystematicIDs to official gene names

Takes .csv files with Agilent SystematicIDs and fetches Entrez geneIDs, gene names, mRNA accessions, and protein accessions.

Usage:

Add name of files you want to parse to FILE_LIST.

Run > python sysname_to_gene.py in same folder as files of interest