Pinned Repositories
CoV-homoplasy-filtering
Methods for filtering out spurious homoplasic sites for SARS-CoV-2 assemblies.
ID-microbiome-practical
A practical reanalysing a microbiome dataset from Palleja et al. (2018)
mcroni
Scripts for finding and processing promoter variants upstream of mcr-1
Millionaire-coughing
Statistical analysis of coughing patterns during Charles Ingram's appearance on 'Who Wants To Be A Millionaire?'
mobile-gene-regions
Analysing the genomic context of mobile genes
Pathogen-host-range
R-M-and-plasmids
rmsFinder
Scripts for finding restriction-modification systems in bacterial genomes.
vettius-valens
Data analysis of the theories of the 2nd century astrologer Vettius Valens
analytics
analytics
liampshaw's Repositories
liampshaw/mcroni
Scripts for finding and processing promoter variants upstream of mcr-1
liampshaw/mobile-gene-regions
Analysing the genomic context of mobile genes
liampshaw/rmsFinder
Scripts for finding restriction-modification systems in bacterial genomes.
liampshaw/Millionaire-coughing
Statistical analysis of coughing patterns during Charles Ingram's appearance on 'Who Wants To Be A Millionaire?'
liampshaw/ID-microbiome-practical
A practical reanalysing a microbiome dataset from Palleja et al. (2018)
liampshaw/Pathogen-host-range
liampshaw/R-M-and-plasmids
liampshaw/vettius-valens
Data analysis of the theories of the 2nd century astrologer Vettius Valens
liampshaw/CoV-homoplasy-filtering
Methods for filtering out spurious homoplasic sites for SARS-CoV-2 assemblies.
liampshaw/pr_hype
Analysis of publicly available data from Sumner et al. (2014): http://www.bmj.com/content/349/bmj.g7015
liampshaw/beta-lactamases
liampshaw/bioconda-recipes
Conda recipes for the bioconda channel.
liampshaw/bioinformatics-1
Utilities written for bioinformatics
liampshaw/collectors
The OpenTrials data collectors + warehouse schema definition.
liampshaw/blah
liampshaw/BREX-phage-motifs
liampshaw/lefse_scripts
Tools for converting data for LEfSe analysis
liampshaw/liampshaw.github.io
Build a Jekyll blog in minutes, without touching the command line.
liampshaw/mashCluster
liampshaw/mcr1-regulatory-variants
Analysis of regulatory region of mcr-1
liampshaw/neotree-android
NeoTree - Android client
liampshaw/oxf-dtp-project-2022
liampshaw/pangraph-tutorials
Tutorials for using pangraph
liampshaw/pangraph_annotations
liampshaw/Promotech
Machine-learning-based general bacterial promoter prediction tool.
liampshaw/Smil-Growth-2019
Datasets from Growth (2019) by Vaclav Smil with reproducible fits
liampshaw/Trieste-2023-project
group project on palindromes in plasmids