/Kubota_puQTL

Codes used in puQTL manuscript

Primary LanguagePython

Kubota_puQTL

This repository contains the data analysis code used in the manuscript:

Mapping of promoter usage QTL using RNA-seq data reveals their contributions to complex traits. Naoto Kubota, Mikita Suyama. PLoS Comput. Biol. 18(8): e1010436. 2022. https://doi.org/10.1371/journal.pcbi.1010436

Here is the link of puQTL association results: https://zenodo.org/record/6269326

Dependencies

  • Python (3.8.5)
  • Pandas (1.1.3)
  • Matplotlib (3.3.1)
  • Seaborn (0.11.0)
  • Scipy (1.6.2)
  • Docker (20.10.7)

Docker images