/bulkPseudotime

Pseudotime Analysis for Bulk Data

Primary LanguageROtherNOASSERTION

bulkPseudotime

The goal of bulkPseudotime is to do pseudotime analysis on bulk data. It's recommonded to be applied for time course bulk-seq data.

Installation

You can install the development version of bulkPseudotime like so:

# install.packages("devtools")
devtools::install_github("junjunlab/bulkPseudotime")

# or
remotes::install_github("junjunlab/bulkPseudotime")

Documentation

试试 bulkRNA 做拟时序分析?


References

  • 普通的Bulk转录组也能做“拟时序”分析吗?

  • Zhao L, Yang Y, Chen J, et al. Dynamic chromatin regulatory programs during embryogenesis of hexaploid wheat. Genome Biol. 2023;24(1):7. Published 2023 Jan 13. doi:10.1186/s13059-022-02844-2

  • Liu X, Bie XM, Lin X, et al. Uncovering the transcriptional regulatory network involved in boosting wheat regeneration and transformation [published correction appears in Nat Plants. 2024 Jan;10(1):194. doi: 10.1038/s41477-024-01619-w

  • Leiboff S, Hake S. Reconstructing the Transcriptional Ontogeny of Maize and Sorghum Supports an Inverse Hourglass Model of Inflorescence Development. Curr Biol. 2019;29(20):3410-3419.e3. doi:10.1016/j.cub.2019.08.044