Pinned Repositories
carveme
CarveMe: genome-scale metabolic model reconstruction
Chen_Sushma_AMR
Cross_Feeding_Model_PLoSComputBiol20_Scripts
Deep_learning_metabolomics_Sergei
DFdynamics
Computational analysis of SCFA time series data
EchinocandinHeteroresistance
ecological_dynamics_of_gut_microbiome
Fungal-genetics-and-computational-biology
Mathematical models, bioinformatics, machine learning and beyond
MSKCC_Microbiome_SD2021_Scripts
Source codes to reproduce figures in our Data Science paper
Source_code_for_Pseudomonas_Metabolomics_Paper
Source codes for systematic analysis of metabolomics of Pseudomonas aeruginosa
liaochen1988's Repositories
liaochen1988/DFdynamics
Computational analysis of SCFA time series data
liaochen1988/Fungal-genetics-and-computational-biology
Mathematical models, bioinformatics, machine learning and beyond
liaochen1988/MSKCC_Microbiome_SD2021_Scripts
Source codes to reproduce figures in our Data Science paper
liaochen1988/Source_code_for_Pseudomonas_Metabolomics_Paper
Source codes for systematic analysis of metabolomics of Pseudomonas aeruginosa
liaochen1988/carveme
CarveMe: genome-scale metabolic model reconstruction
liaochen1988/Chen_Sushma_AMR
liaochen1988/Cross_Feeding_Model_PLoSComputBiol20_Scripts
liaochen1988/Deep_learning_metabolomics_Sergei
liaochen1988/EchinocandinHeteroresistance
liaochen1988/ecological_dynamics_of_gut_microbiome
liaochen1988/Fish_network_inference_BMCEcol20_Scripts
The algorithm improves the commonly used technique for parameterizing generalized Lotka-Volterra equation.
liaochen1988/Growth_curve_analysis
Wrapper of python package "croissance" to analyze direct readout of bioreactor
liaochen1988/iGAME_Rulebased_Modeling
liaochen1988/ImmunoGeneExpression_Yahui
liaochen1988/Manuscript_oral_bacteria_in_feces
This repository holds all data and scripts to reproduce figures in the manuscript
liaochen1988/Modeling_Ecoli_H2O2_response
Mathematical modeling of H2O2 diffusion, degradation and stimulation of global oxidative stress response
liaochen1988/MSKCC_Paeru_isolates_azt_resistance_PLoSComputBiol19_Scripts
Python codes for building integrative metabolic models to understand metabolic consequences of NalD mutation
liaochen1988/Oral_bacterial_manuscript_initial_submission
Codes to regenerate figures in the marker hypothesis manuscript
liaochen1988/Oral_bacterial_manuscript_revision
liaochen1988/OralPerc
Prediction of gut microbiome proportion with oral origin
liaochen1988/RLQ_analysis
Examples of RLQ analysis for the Xavier lab
liaochen1988/statrethinking_winter2019
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019
liaochen1988/ThermodynamicCrossFeedingTongWang
liaochen1988/UIUC_CS466_Miniproject_Motif_Finder
liaochen1988/VMPS-1d-Boson