/MusiteDeep_web

This repository contains the stand-alone tool for MusiteDeep server

Primary LanguagePythonMIT LicenseMIT

MusiteDeep is a deep-learning based webserver for protein post-translational modification site (PTM) prediction and visualization

The MusiteDeep web server is available at http://www.musite.net. This repository contains the stand-alone tools in python to run MusiteDeep on a local machine:

  • 1 PTM prediction: refer to ./MusiteDeep
  • 2 Homology-based search by BLAST: refer to ./mongoblast
  • 3 Mapping the predicted PTM sites to protein 3D structure: refer to ./PTM2S

Citation：

Please cite the following papers for using MusiteDeep:

[1] Wang, D., et al. (2017) MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction, Bioinformatics, 33(24), 3909-3916.

[2] Wang, D., et al. (2019) Capsule network for protein post-translational modification site prediction, Bioinformatics, 35(14), 2386-2394.