libscran

C++ libraries for single-cell analysis

Pinned Repositories

aggregate-demonstrator
Demonstration of how to vendor aggregateAcrossCells
Language:C++1 2 00
libscran
scran, but in C++.
Language:C++7 3 170
mnncorrect
C++ implementation of the MNN correction algorithm
Language:C++4 2 30
qdtsne
Quick-and-dirty t-SNE in C++
Language:C++9 2 42
Rlibigraph
Prebuilt igraph static library for Bioconductor packages
Language:R10
scran-cli
A command line interface to scran
Language:C++3 3 00
scran.chan
A slimmed down version of scran, based on the C++ library of the same name.
Language:R9 3 30
scran_aggregate
Aggregate expression values across groups of cells
Language:C++10
scrapper
R bindings to C++ code for single-cell analysis
Language:R30
umappp
C++ port of the UMAP algorithm
Language:C++46 3 1315

libscran's Repositories

libscran/umappp
C++ port of the UMAP algorithm
Language:C++46 3 1315
libscran/qdtsne
Quick-and-dirty t-SNE in C++
Language:C++9 2 42
libscran/scran.chan
A slimmed down version of scran, based on the C++ library of the same name.
Language:R9 3 30
libscran/libscran
scran, but in C++.
Language:C++7 3 170
libscran/mnncorrect
C++ implementation of the MNN correction algorithm
Language:C++4 2 30
libscran/scran-cli
A command line interface to scran
Language:C++3 3 00
libscran/scrapper
R bindings to C++ code for single-cell analysis
Language:R30
libscran/aggregate-demonstrator
Demonstration of how to vendor aggregateAcrossCells
Language:C++1 2 00
libscran/mumosa
Multi-modal single-cell analyses
Language:C++1
libscran/Rlibigraph
Prebuilt igraph static library for Bioconductor packages
Language:R10
libscran/scran_aggregate
Aggregate expression values across groups of cells
Language:C++10
libscran/.github
Organization profile
libscran/clrm1
A slightly improved method for ADT normalization
Language:R
libscran/gsdecon
C++ port of the GSDecon algorithm
Language:C++
libscran/nenesub
Subsampling based on nearest neighbors
Language:C++
libscran/phyper
Hypergeometric distribution tail calculations
Language:C++
libscran/scran_blocks
Blocking utilities for libscran
Language:C++
libscran/scran_graph_cluster
Graph-based clustering for single-cell data
Language:C++
libscran/scran_markers
Marker detection from single-cell expression data
Language:C++
libscran/scran_norm
Normalize and log-transform count matrices
Language:C++
libscran/scran_pca
Various flavors of principal components analysis
Language:C++
libscran/scran_qc
Compute simple quality control metrics for each cell
Language:C++
libscran/scran_tests
Test utilities for libscran
Language:C++
libscran/scran_variances
Model per-gene variances in log-expression data
Language:C++