bedcolor help
UgoBor opened this issue · 3 comments
Hi Daofeng,
Im using a bedcolor file to show on the browser RNASeq data, as remote track; in red are labeled the upregulated genes and in blue the downregulated.
Uploaded as local track the file shows the results with the proper colours but with the same file, as remote track, the colour on the forth column are used as names instead.
Even indexed after bgzip/tabix sorting, the results is the same.
Any suggestions?
Thank you
Ugo
The bed file is is this form:
chr1 10108212 10206993 #0000FF
chr1 17797269 17836568 #FF0000
chr1 21288799 21300391 #FF0000
chr1 25385059 25388163 #0000FF
And the JSON snippet is:
{
"type": "bedGraph",
"url": "http://genome-br1./table_sig_color_chr_sorted.bed",
"name": "wtko_rna-seq",
"showOnHubLoad": true,
"metadata": {
"sample": "cortex",
"assay": "RNAseq"
}
}
Hi @UgoBor thanks for using the browser! You would need use "type": "bedcolor", and the url file need be processed with bgzip/tabix.
sorry, my bad! the "type": is indeed bedcolor!
the file is processed with bgzip/tabix. I process the file before moving it in its final destination. Could be this the problem?