genome-browser
There are 43 repositories under genome-browser topic.
GMOD/jbrowse
JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.
tariqdaouda/pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
kcleal/gw
Genome browser and variant annotation
fanglu0411/sgs
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
yatisht/usher
Ultrafast Sample Placement on Existing Trees
fmalmeida/bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
MoMI-G/MoMI-G
Modular Multi-scale Integrated Genome Graph Browser
lidaof/eg-react
WashU Epigenome Browser
stothard-group/cgview-js
CGView.js creates interactive circular and linear genome maps.
yuifu/millefy
Millefy: Genome browser-like visualization of single-cell RNA-seq dataset
GMOD/jbrowse-jupyter
A python package for showing JBrowse views
epigen/genome_tracks
A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.
Marlin-Na/TnT
Interactive visulizations for track-based genomic data in R
genenotebook/genenotebook
A collaborative notebook for genes and genomes
JetBrains-Research/jbr
JBR Genome Browser
yatisht/strain_phylogenetics
Tools for analyzing and comparing SARS-CoV-2 phylogenies
DBKERO/genome_browser
Simple and fast html5 canvas based genome browser
Ensembl/trackhub-registry
Specifications and implementation of the TrackHub registry
dlesl/clonifier
A web app for viewing plasmid maps & genomes, and simulating PCR and Gibson assembly
sartorlab/mint
A pipeline for the integration of DNA methylation and hydroxymethylation data
klcola/abrowse
The Advanced Genome Browser
LincolnSteinLab/gdc-viewer
A JBrowse plugin for viewing GDC Data
RNAcentral/angularjs-genoverse
An AngularJS (1.x) directive, wrapping the Genoverse genome browser.
Arabidopsis-Information-Portal/jbrowse
A modern genome browser built with JavaScript and HTML5.
LincolnSteinLab/icgc-viewer
A JBrowse plugin for viewing ICGC Data
nijibabulu/bam_reducers
Reduce BAM file size by removing tags and quality information (>50 %) and/or downsampling.
stevekm/UCSC-custom-track-generator
Script to automatically generate custom tracks to load on UCSC
Aceofspades25/GenBrowser
An application for browsing and running statistical analyses on genome FASTA files.
maximilianh/browserInstall
An install script for the UCSC Genome Browser
oleksulkowski/Syn-CpG-Spacer
A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides
sartorlab/mint_galaxy
Galaxy pipeline for the Mint
codecreatede/tairaccession
python package for arabidopsis genome analysis
epiviz/iSEEu.epiviz
Epiviz genome browser in iSEE
jacobwindsor/SQANTIExplorer
Inter-sample analysis of SQANTI classifications
niaid/Genome-Browsers
This repo contains materials for the Genome Browsers course, taught as part of ACE 2021.