liel-cohen

ADCOP_Max-sum

Code used for experiments presented in the paper "Applying Max-sum to Asymmetric Distributed Constraint Optimization Problems" by Roie Zivan, Tomer Parash, Liel Cohen and Yarden Naveh.

CytoMod

Create modules of co-signaling cytokines for analysis of multiplexed cytokine data (e.g. Luminex)

IMMREP_2022_TCRSpecificity

LielTools

Python_classes

SETE

Sequence-based ensemble learning approach for TCR epitope binding prediction

SigniCorr

Script for plotting a pairwise correlation matrix as heatmap with annotated p-values, after multiplicity adjustment for multiple hypothesis testing.

tcrdist_KNN

TCRGP

TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.

tcrsampler

Sample TCRs according to VDJ gene usage frequency

liel-cohen/CytoMod

Create modules of co-signaling cytokines for analysis of multiplexed cytokine data (e.g. Luminex)

liel-cohen/tcrdist_KNN

liel-cohen/ADCOP_Max-sum

Code used for experiments presented in the paper "Applying Max-sum to Asymmetric Distributed Constraint Optimization Problems" by Roie Zivan, Tomer Parash, Liel Cohen and Yarden Naveh.

liel-cohen/IMMREP_2022_TCRSpecificity

liel-cohen/LielTools

liel-cohen/Python_classes

liel-cohen/SETE

Sequence-based ensemble learning approach for TCR epitope binding prediction

liel-cohen/SigniCorr

Script for plotting a pairwise correlation matrix as heatmap with annotated p-values, after multiplicity adjustment for multiple hypothesis testing.

liel-cohen/TCRGP

TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.

liel-cohen/tcrsampler

Sample TCRs according to VDJ gene usage frequency