/plot_gc_cov

Plot GC and coverage of selected sequences.

Primary LanguagePythonGNU General Public License v3.0GPL-3.0

Personal use.

Description

gccov is a tiny tool used for visualization of GC and coverage of assemblies.

Install

pip3 install gccov

Example

We are interested in the distribution of GC & coverage of two genomes among the whole assemblies. Blue and red bubbles are representing genome A and B, respectively. It is very clear in the below figure that these two genomes share similar GC content and coverage.

![gccov_p1]({{ 'assets/picbed/proj/gccov_p0.png' | relative_url }})

When you zoom in, you can clearly see the difference between these two genomes.

![gccov_p2]({{ 'assets/picbed/proj/gccov_p1.png' | relative_url }})

Contact

Jie Li