Pinned Repositories
canu
A single molecule sequence assembler for genomes large and small.
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
DALIGNER
Find all significant local alignments between reads
FALCON
FALCON: experimental PacBio diploid assembler
FALCON_unzip
Making diploid assembly becomes common practice for genomic study
GenomicConsensus
PacBio® variant and consensus caller
Git
Git teset
HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
legionella_pneumophila_genomics
This repository contains bioinformatics scripts and a Docker container to perform the in silico prediction of Legionella pneumophila serogroup from short read sequences using a supervised machine learning approach.
lijingjing1's Repositories
lijingjing1/canu
A single molecule sequence assembler for genomes large and small.
lijingjing1/cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
lijingjing1/DALIGNER
Find all significant local alignments between reads
lijingjing1/FALCON
FALCON: experimental PacBio diploid assembler
lijingjing1/FALCON_unzip
Making diploid assembly becomes common practice for genomic study
lijingjing1/GenomicConsensus
PacBio® variant and consensus caller
lijingjing1/Git
Git teset
lijingjing1/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
lijingjing1/LACHESIS
The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)
lijingjing1/legionella_pneumophila_genomics
This repository contains bioinformatics scripts and a Docker container to perform the in silico prediction of Legionella pneumophila serogroup from short read sequences using a supervised machine learning approach.
lijingjing1/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
lijingjing1/nanosv
SV caller for nanopore data
lijingjing1/NGS-PrimerPlex
NGS-PrimerPlex is a high-throughput tool for mupltiplex primer design
lijingjing1/primalscheme
lijingjing1/shasta
De novo assembly from Oxford Nanopore reads.
lijingjing1/SURVIVOR
Toolset for SV simulation, comparison and filtering
lijingjing1/wtdbg2
Important update of wtdbg