lilab-bcb/pegasus

scTransform support

mikecuoco opened this issue · 0 comments

Hi @bli25 et al.,

Thank you for developing this incredible toolkit! Is has saved our team so much time and effort in our single-cell analysis workflow. We are very interested in using an scTransform-like approach to normalize the raw counts in-place of log_norm. Have you considered adding a scTransform function for normalization?

It looks like there are some python implementations out there:

https://github.com/saketkc/pysctransform
https://github.com/atarashansky/SCTransformPy
https://github.com/deto/SCTransformPy

Mike