lilab-bcb

Pinned Repositories

altocumulus
Command line tool for submitting WDL jobs to Terra or Cromwell server.
Language:Python7 2 30
backedarray
Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5
Language:Jupyter Notebook6 2 00
cirrocumulus
Bring your single-cell data to life
Language:JavaScript71 7 4214
cumulus
Cloud-based scalable and efficient single-cell genomics workflows
Language:WDL53 6 4630
cumulus_feature_barcoding
Language:C++2 5 01
demuxEM
Demultiplexing cell/nucleus hashing data for single-cell genomics
Language:Python1 5 82
harmony-pytorch
Language:Python46 4 39
nmf-torch
Language:Python9 4 21
pegasus
A tool for analyzing trascriptomes of millions of single cells.
Language:Python78 7 7221
pegasusio
pegasus io module for reading/writing single-cell genomics data
Language:Python7 4 54

lilab-bcb's Repositories

lilab-bcb/pegasus
A tool for analyzing trascriptomes of millions of single cells.
Language:Python78 7 7221
lilab-bcb/cirrocumulus
Bring your single-cell data to life
Language:JavaScript71 7 4214
lilab-bcb/cumulus
Cloud-based scalable and efficient single-cell genomics workflows
Language:WDL53 6 4630
lilab-bcb/harmony-pytorch
Language:Python46 4 39
lilab-bcb/nmf-torch
Language:Python9 4 21
lilab-bcb/altocumulus
Command line tool for submitting WDL jobs to Terra or Cromwell server.
Language:Python7 2 30
lilab-bcb/pegasusio
pegasus io module for reading/writing single-cell genomics data
Language:Python7 4 54
lilab-bcb/backedarray
Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5
Language:Jupyter Notebook6 2 00
lilab-bcb/cumulus_feature_barcoding
Language:C++2 5 01
lilab-bcb/stratocumulus
Backend component of Cumulus for different cloud environments.
Language:Python2 2 10
lilab-bcb/cumulus-experiment
Language:Python1 3 00
lilab-bcb/demuxEM
Demultiplexing cell/nucleus hashing data for single-cell genomics
Language:Python1 5 82
lilab-bcb/aws-genomics-workflows
Genomics Workflows on AWS
Language:Shell
lilab-bcb/bbknn
Batch balanced KNN
Language:Python1 0
lilab-bcb/bcb-dockers
Language:R2 1
lilab-bcb/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1 0
lilab-bcb/cirrocumulus-app-engine
Language:Python7 31
lilab-bcb/harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
Language:Python1 0
lilab-bcb/hnswlib
Header-only C++/python library for fast approximate nearest neighbors
Language:C++0 0
lilab-bcb/lilab-bcb.github.io
Dr. Bo Li's lab website
Language:HTML3 0
lilab-bcb/louvain-feedstock
A conda-smithy repository for louvain.
1 0
lilab-bcb/merge-test
2 0
lilab-bcb/pegasus-test-data
Data used for CI test of pegasus repo
2 0
lilab-bcb/pegasus-tutorials
Tutorial notebooks of Pegasus
Language:Jupyter Notebook2 0
lilab-bcb/pegasusio-test-data
4 0
lilab-bcb/scCODA
A statistical test for compositional changes in scRNA
Language:Jupyter Notebook0 0
lilab-bcb/skylab
Secondary analysis pipelines
Language:wdl1 01
lilab-bcb/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python1 0
lilab-bcb/terra-docker
Language:Jupyter Notebook1 0
lilab-bcb/TRUST4
TCR and BCR assembly from RNA-seq data
Language:C0 0