Pinned Repositories
altocumulus
Command line tool for submitting WDL jobs to Terra or Cromwell server.
backedarray
Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5
cirrocumulus
Bring your single-cell data to life
cumulus
Cloud-based scalable and efficient single-cell genomics workflows
cumulus_feature_barcoding
demuxEM
Demultiplexing cell/nucleus hashing data for single-cell genomics
harmony-pytorch
nmf-torch
pegasus
A tool for analyzing trascriptomes of millions of single cells.
pegasusio
pegasus io module for reading/writing single-cell genomics data
lilab-bcb's Repositories
lilab-bcb/pegasus
A tool for analyzing trascriptomes of millions of single cells.
lilab-bcb/cirrocumulus
Bring your single-cell data to life
lilab-bcb/cumulus
Cloud-based scalable and efficient single-cell genomics workflows
lilab-bcb/harmony-pytorch
lilab-bcb/nmf-torch
lilab-bcb/altocumulus
Command line tool for submitting WDL jobs to Terra or Cromwell server.
lilab-bcb/pegasusio
pegasus io module for reading/writing single-cell genomics data
lilab-bcb/backedarray
Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5
lilab-bcb/cumulus_feature_barcoding
lilab-bcb/stratocumulus
Backend component of Cumulus for different cloud environments.
lilab-bcb/cumulus-experiment
lilab-bcb/demuxEM
Demultiplexing cell/nucleus hashing data for single-cell genomics
lilab-bcb/aws-genomics-workflows
Genomics Workflows on AWS
lilab-bcb/bbknn
Batch balanced KNN
lilab-bcb/bcb-dockers
lilab-bcb/bioconda-recipes
Conda recipes for the bioconda channel.
lilab-bcb/cirrocumulus-app-engine
lilab-bcb/harmonypy
🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
lilab-bcb/hnswlib
Header-only C++/python library for fast approximate nearest neighbors
lilab-bcb/lilab-bcb.github.io
Dr. Bo Li's lab website
lilab-bcb/louvain-feedstock
A conda-smithy repository for louvain.
lilab-bcb/merge-test
lilab-bcb/pegasus-test-data
Data used for CI test of pegasus repo
lilab-bcb/pegasus-tutorials
Tutorial notebooks of Pegasus
lilab-bcb/pegasusio-test-data
lilab-bcb/scCODA
A statistical test for compositional changes in scRNA
lilab-bcb/skylab
Secondary analysis pipelines
lilab-bcb/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
lilab-bcb/terra-docker
lilab-bcb/TRUST4
TCR and BCR assembly from RNA-seq data