/awesome-perl-based-bioinformatics-tools

A collection of awesome Perl-based Bioinformatics tools

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Awesome perl-based bioinformatics tools

A collection of awesome Perl-based bioinformatics tools

  1. Circos [http://circos.ca] Circos is a software package for visualizing data and information.
  2. MAKER [http://www.yandell-lab.org/software/maker.html] MAKER is a portable and easily configurable genome annotation pipeline.
  3. AliTV-perl-interface [https://github.com/AliTVTeam/AliTV-perl-interface/] Visualize multiple whole genome alignments as circular or linear maps
  4. LTR_retriever/LAI [https://github.com/oushujun/LTR_retriever] LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
  5. ViewBS [https://github.com/xie186/ViewBS] ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data