lillycummins
Microbiology and Infection PhD Student at the University of Birmingham.
University of BirminghamBirmingham
Pinned Repositories
ABRicateToPhandango
A script to convert an ABRicate summary to a suitable format for phandango visualisation
academic-website
IdentifierToGroupName
A script that converts numeric identifiers used as sequence headers in pan_genome_reference.fa output file of Panaroo (pre v1.1.2) to corresponding group names
InterPangenome
All scripts used for analysis in the inter-pangenome study.
ReformattedSecReT6
A reformatted version of the SecReT6 type VI secretion system database (03/2022) that is suitable for use with ABRicate
panaroo
An updated pipeline for pangenome investigation
lillycummins's Repositories
lillycummins/ABRicateToPhandango
A script to convert an ABRicate summary to a suitable format for phandango visualisation
lillycummins/academic-website
lillycummins/ReformattedSecReT6
A reformatted version of the SecReT6 type VI secretion system database (03/2022) that is suitable for use with ABRicate
lillycummins/IdentifierToGroupName
A script that converts numeric identifiers used as sequence headers in pan_genome_reference.fa output file of Panaroo (pre v1.1.2) to corresponding group names
lillycummins/InterPangenome
All scripts used for analysis in the inter-pangenome study.