Pinned Repositories
COVID-data-cleaning
COVID-Health-Disparities
COVID19-Rt
COVID19-Viz
Visualization of COVID-19 spread metrics.
coxKM
R package for conducting SNP-set association tests for right-censored survival outcomes based on a kernel machine cox regression framework.
GMMAT
R package for GMMAT (Generalized Linear Mixed Model Association Test)
GMMAT_lite
A light version of GMMAT which does not depend on the C++ library boost
iSKAT-GESAT
GESAT/iSKAT tests for ZxE (gene-environment interactions), after accounting for main effects of Z (gene), main effects of E (environment) and X (covariates).
MERMAID
Multilevel Epidemic Regression Model to Account for Incomplete Data
SKAT
Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
Lin Lab's Repositories
lin-lab/COVID19-Viz
Visualization of COVID-19 spread metrics.
lin-lab/COVID19-Rt
lin-lab/COVID-data-cleaning
lin-lab/COVID-Health-Disparities
lin-lab/iSKAT-GESAT
GESAT/iSKAT tests for ZxE (gene-environment interactions), after accounting for main effects of Z (gene), main effects of E (environment) and X (covariates).
lin-lab/SKAT
Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.
lin-lab/coxKM
R package for conducting SNP-set association tests for right-censored survival outcomes based on a kernel machine cox regression framework.
lin-lab/MERMAID
Multilevel Epidemic Regression Model to Account for Incomplete Data
lin-lab/apex
lin-lab/GMMAT
R package for GMMAT (Generalized Linear Mixed Model Association Test)
lin-lab/GMMAT_lite
A light version of GMMAT which does not depend on the C++ library boost
lin-lab/CEPSKAT
CEPSKAT extends the SKAT framework to the setting of continuous extreme phenotype samples.
lin-lab/GHC
R package for Generalized Higher Criticism
lin-lab/MetaSKAT
MetaSKAT is a R package for multiple marker meta-analysis across studies.